transformGamPoi-Paper

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memory issue for large dataset

7

Hi, Nice paper and thanks for sharing the scripts! I am trying to use your code to transform (acosh, pearson, dino,...) a large dataset (~1M cells), but get out-of-memory error...

Minhui-Chen

Reproduce downsample benchmark

4

Hi, Thank you for the great work. I had an issue when reproducing the results in the downsampling benchmark and any insight would be highly appreciated! Basically, I am trying...

kuang-da

[Question] How to benchmark another transformation

12

Hi @const-ae, First up, love the paper! I was wondering what is the best way to run your benchmarking on a single other transformation? I've implemented an empirical bayesian approach...

mjcasy

Running logp1 transformation method

3

Hey thanks for your code. I want to run the logp1 method on my dataset. I am doing it by running `--transformation logp1` and `--alpha TRUE`. Are these two commands...

cakeinspace