sparseMatrixStats

sparseMatrixStats copied to clipboard

Dear developers @const-ae , I just wanted to give you a heads up that the sparseMatrixStats package is currently failing on the [devel branch of Bioconductor](http://bioconductor.org/checkResults/3.17/bioc-LATEST/sparseMatrixStats/). Please have a look...

jorainer

I am working with large sparse matrices that, after some operations, can return non-sparse matrices of class `dgeMatrix`. I must be missing something here, but when I try to get...

PedroMilanezAlmeida

compilation problem on Mac 12.0.1 with M1 chip

7

I am running Mac OS Monterey, v12.0.1, on an MacBook Pro with M1 chip (13-inch, M1, 2020). I have Apple clang version 13.0.0 (clang-1300.0.29.3) and R version 4.1.0 Patched (2021-07-20...

stephens999

HEADS UP: New default for `ties.method` of {col,row}Ranks()

2

# Background **matrixStats** uses `ties.method = "max"` as the default for `colRanks()` and `rowRanks()` for legacy reasons, but we want eventually update to `ties.method = "average"` to align it with...

HenrikBengtsson

`row/colVars()` and `row/colSds()` methods for xgCMatrix objects silently ignore the supplied `center`

5

See for example the definition of the `rowVars()` method: ``` library(sparseMatrixStats) selectMethod("rowVars", "xgCMatrix") # Method Definition: # # function (x, rows = NULL, cols = NULL, na.rm = FALSE, center...

hpages

colProds and rowProds should accept method= argument

8

Even if it doesn't do anything with them. Just add a `...` to both method definitions so that they don't throw when someone passes in `method=` in a generic.

LTLA