lemur
lemur copied to clipboard
const-ae
Latent Embedding Multivariate Regression
Hi! I was wondering if there is option to use this for differential state analysis (differential expressiona analysis between stim vs ctrl) in a certain cell subset like B cells....
Hello again :D I am getting an error when running `test_de()`. It is the following one: `Error in fit$ridge_penalty : Illegal name after '$' sign: ridge_penalty`. Do you have any...
Hello Constantin, I've been playing a bit with lemur on the following dataset. Basically, a cell line treated under multiple conditions (~10) and I have two replicates of the experiment....
Hi, interesting tool (and the use of the single-cell experiment class is much appreciated). We have single-cell RNA-Seq data from multiple samples at various conditions. This far, I've seen the...
Hi, Really interesting work and really thankful for the general ease of use! The data I have has several subjects,each belonging to either control or treatment so the formula i...
very nice work and well-functioning code! can i test >2 conditions (untreated, treatment A, treatment B) jointly or shall i test pairs of conditions? thanks!
Hi, when trying to install lemur I got the following error: Error: object ‘vars’ is not exported by 'namespace:glmGamPoi' Execution halted ERROR: lazy loading failed for package ‘lemur’ I think...
Hi. Thank you for providing LEMUR packages --- I really appreciate the work you’ve done. Could you provide the intuitive description when the sign of `lfc` and `did_lfc` are opposite...
Hello! Thanks for the interesting package! I'm testing it on one of our datasets, which contains about 1M cells and 1.5k individuals. When calling the `lemur` function, I noticed that...
Hi, Thanks for your effort making this. I have been looking into the package and trying to evaluate how different the results are when using conventional pseudo-bulking + standard DEG...
