prefix flag causes crash

[jsoghigian]

Hi there,

I think the prefix flag is causing a crash...

When I run this command:

$ rd --msa $msa --tree $tree --threads 20 --prefix $prefix

I get this output...

[0.62] Creating directory There was an error during processing: filesystem error: cannot create directory: No such file or directory []

The same dataset works fine without the prefix flag (so it isn't the variables/data I am using), but I want to use the same inputs with different parameters, so the prefix flag would be great. Did I do something wrong here?

[computations]

Hey, sorry for the late reply. There is indeed an issue with the prefix option when there was no directory in the prefix. I just pushed an update to master that should fix the option. Please let me know if it is working for you