computational-cell-analytics
Implement saving tracking results to CTC format
We should implement saving of tracking results to the CTC format, so that we can export them to a more standardized format. What we would need is a function
def export_tracking_result_to_ctc(segmentation: np.ndarray, lineages: List[Dict], output_folder: str) -> None:
...
It should be added to multi_dimensional_segmentation.py.
@anwai98 you're more familiar with the format than me, so maybe you could take care of this? We can also first discuss next week to clarify the details.
Sure. I can take care of this! (as you mentioned, it would be best to discuss this first before I start with the implementation)
Following up on this issue, we have a first implementation of storing tracks from automatic tracking mode (taking the implementation from trackastra)
Next, we need to integrate it with interactive segmentation, to export the final output masks from the tracking annotator in CTC output.