micro-sam
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computational-cell-analytics
Segment Anything for Microscopy
Closes https://github.com/computational-cell-analytics/micro-sam/issues/530 The napari-hub discovers napari plugins by scraping PyPI, looking for the napari framework classifier. When it finds a package with the napari classifier, it will automatically populate a...
This in particular could potentially be a nice feature to segment vessel-like thin (and long) structures using positive scribblles, or eliminate the outside-boundary region in-a-go for parts outside the object...
unmerged scripts from #227. We will revisit this once the modelzoo integration is fully done.
Hello micro-sams! I would like to install your micro-sam on HPC for UGent researchers. We are using EasyBuild for handling installations and softwares. Could you help me please with installing...
We currently don't support multiscale image layers and the goal of this PR is to address this. If a user selects a multiscale image layer for embedding computation they will...
Hi, we would be very keen in using micro-sam in conjunction with MoBIE. Where would be good points for coding linkages for: - opening OME-Zarr data from a MoBIE project...
- [x] [Annotation tools](https://computational-cell-analytics.github.io/micro-sam/micro_sam.html#installation): Add links to videos. - [x] [Installer](https://computational-cell-analytics.github.io/micro-sam/micro_sam.html#from-installer) - [x] update the links to new installers (pending building and uploading them) - [x] update the description of...
- [x] Update the [developer documentation](https://github.com/computational-cell-analytics/micro-sam/blob/master/doc/development.md) to reflect new plugin design - [x] Add [BAND](https://github.com/computational-cell-analytics/micro-sam/blob/master/doc/band.md) to the doc. (Formulating this more general for future services like KissKI or BioEngine) -...
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Segment Anything for Microscopy