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no output foler

Open Malabady opened this issue 5 months ago • 0 comments

Hi, I am using the following command:

/RATTLE-1.0/rattle cluster --input all_fastq_pass_filtered.fq --threads 24 --iso --rna --output ./rattle_output

the command gives these following messages:

RNA mode: true Reading fasta file... Done Gene clustering done 21698 gene clusters found

However, no clusters are written in the output folder. the output folder is totally empty. when I remove the output folder, assuming the the command will create it, the run finishes with above messages but without an output folder.

What's happening?

thanks

Malabady avatar Sep 09 '25 21:09 Malabady