searchgui
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compomics
Highly adaptable common interface for proteomics search and de novo engines
I am trying to analyze MS data from our proteomics facility with searchGUI but the search is interrupted each time. `Error: Source '2022-11-16_Exploris480_P22-41_2665/Raw/Cement1.comet.pep.xml' does not exist. I tried to deactivate...
Hi, I have an experiment in which the samples (for specific reasons) have been digested using a combination of enzymes, LysC, Asp-N and Glu-N with 8 missed cleavages. Is there...
Hi, Is there any interest in integrating additional search engines? [Sage is an open source](https://github.com/lazear/sage) (MIT licensed) search engine that utilizes the ion-indexing approach to run fast narrow & open...
There is an issue occurring when running OMSSA. Could you help me fix the issue?
Hello, I am trying to install searchGui and peptide shaker on my computer (windows 11 home). However, after unzipping both folders, when I click the .jar files I get an...
Hi There, I am wondering if there are any plans to ever support timsTOF data in a way, so that they can be directly loaded into SearchGUI? .d files can...
On the newest version of the docker image on Biocontainers (quay.io/biocontainers/searchgui:4.0.33--h779adbc_0 found at https://biocontainers.pro/tools/searchgui), MS Amanda and Myrimatch are not executing correctly. Namely; MS Amanda does not run; even trying...
During the execution of SearchGUI I observe the following in the errors: ``` MS-GF+ Release (v2021.01.08) (8 January 2021) Java 11.0.8-internal (N/A) Linux (amd64, version 3.10.0-1160.el7.x86_64) Loading database files... Warning:...
One of the search engines (tide) seems to need glibc: ``` /gpfs1/work/songalax/galaxy-dev/database/jobs_directory/005/5277/working/bin/resources/Tide/linux/linux_64bit/crux: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /gpfs1/work/songalax/galaxy-dev/database/jobs_directory/005/5277/working/bin/resources/Tide/linux/linux_64bit/crux) ``` Unfortunatelly we execute on a cluster system an can...
Hi Marc and Harald, I'm sure this has been asked/ explained before but I couldn't find a solution. I am interested in searching for PTMs on C, K, H AND...
