CAMSA
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compbiol
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
Hi, Is there any thread option to speed up the jobs ? I am trying to generate the meta-assembly for fish genomes, taking a longer time. Suggestions!
After running camsa on two scaffold files generated by a SPAdes run on two samples, I wanted to convert the merged points file to a FASTA file. I ran the...
Hi @aganezov, I'm trying to merge two assemblies resulted from different settings with Supernova. Since I have fasta file I think I have to convert them in point formatted file...
Hi aganezov, Thanks for providing CAMSA! I could successfully merge scaffolds in several assemblies already. I have however encountered the following error for three different assemblies when using the command...
Hi aganezov, First of all thank you for this promising program. I processed some assemblies and scaffolds with fasta2camsa to create points files. But these are running in single thread...
Building from source from pypi fails with the following error: ``` /setup.py", line 43, in long_description=open("pypi_full.rst").read() FileNotFoundError: [Errno 2] No such file or directory: 'pypi_full.rst' ``` I think you just...
I am hoping to use CAMSA to merge two sets of scaffolds produced by different algorithms. Upon upload, NCBI requires information about what evidence was used to join contigs around...
hi, i was trying to install camsa but it occurs with a error (base) hema@hema-Aspire-A715-51G:~$ pip install camsa Collecting camsa Using cached CAMSA-1.3-py2.py3-none-any.whl (4.5 MB) Requirement already satisfied: six>=1.10.0 in...
hi, I was using camsa to assemble bacterial scafflods to a chromosome the fasta2camsa.py has ran successfully by the assembly_points are empty (camsa) hema@hema-Aspire-A715-51G:~/camsa$ fasta2camsa_points.py assembly1.fasta assembly2.fasta assembly3.fasta assembly4.fasta assembly5.fasta...