MITObim
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chrishah
MITObim - mitochondrial baiting and iterative mapping
Hi Christoph, Is it possible to use two or more Illumina libraries (with different insert sizes) as inputs to a single MITObim run? In the MIRA manifest, I can indeed...
Dear community, According to the manual of MITObim, this useful software can use PacBio long reads for mitochondria assembly. Can I use Nanopore long reads, too? Thank you.
Hi, I am trying to assemble a genome and I have tried using the docker or the local installation and both times it failed. I installed MitoBim and put the...
the removed test allows the --help and --version flags to work as expected. the change to the shebang lines allow to run the scripts on systems where python/perl is installed...
Hi, I'm running MITObim following tutorial n.3. At iteration 1 it stops and tell me reference sequence is too long. How big my fasta file can actually be? currently it's...
I'm just starting with MITObim to get a complete mitochondrial genome from my data. So far, I've gotten the maf file that seems to be successfully generated by using mira...
Hi, I want to run the MITOBIM for my samples, but at first I should interleave my pair end fastq files. I download this python script, interleave-fastqgz-MITOBIM.py, and when I...
Dear Christoph: I am testing MITObim using the testdata1.tgz and run into several problems. My operating system run centos 6.3. Mira was installed using conda, the version is 4.9.6 The...
(I see that this question has been asked by others before here and on the Google Group but I don't think it's actually been answered). I'm using MITObim to assemble...
