Descriptions of the columns in the output file

[harper357]

Hi,

I am trying to write a MultiQC plugin for CheckM2 and I can't seem to find descriptions or explanations of some of the columns in the output file. I see some descriptions in the paper, but they are more for when you know the ground truth. I mostly want to make sure that I am describing anything in correctly.

[chklovski]

Hi, which columns specifically are you interested in?

[harper357]

Ideally, all of them like the CheckM wiki page: https://github.com/Ecogenomics/CheckM/wiki/Reported-Statistics#qa

However, if you can just give a look over what I put for the plugin, that would be great. See lines of interest here: https://github.com/MultiQC/MultiQC/blob/2e5706912bc0e7af29e51f0350bba6fbee9132ba/multiqc/modules/checkm2/checkm2.py#L57-L135

If there are different columns you think are more important to report in the plugin, I am happy to update it if you can tell me what they are.