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Testrun ERROR: No DIAMOND annotation was generated.

Open Mayurk619 opened this issue 1 year ago • 4 comments

Hi,

I'm facing the error in testrun, I have installed diamond, also exported to path variable. I followed installation through conda and I was able to run the command. I'm using wsl in windows, I'm not sure if this error is serious or can be ignored. Screenshot 2024-05-27 175705

Mayurk619 avatar May 27 '24 12:05 Mayurk619

I think it got fixed. I was able to get this result below. I think the problem must be some dependency missing because I was installing other softwares (checkM) and I ran checkm2 testrun again it gave me this.

Name Completeness Contamination Completeness_Model_Used Translation_Table_Used TEST1 100.00 0.74 Neural Network (Specific Model) 11 TEST2 98.54 0.21 Neural Network (Specific Model) 11 TEST3 98.75 0.51 Neural Network (Specific Model) 11

Mayurk619 avatar May 28 '24 11:05 Mayurk619

I had this same issue. @Mayurk619 do you know what dependencies you updated?

kmckindles avatar Aug 07 '24 20:08 kmckindles

same issue here.

I did get a warning when running checkm2 --help ~/.local/lib/python3.8/site-packages/requests/__init__.py:109: RequestsDependencyWarning: urllib3 (2.2.3) or chardet (None)/charset_normalizer (3.3.2) doesn't match a supported version! warnings.warn( Not sure if it is related. I installed checkm2 v1.0.2 via bioconda in a fresh conda environment with python 3.8.

sherlyn99 avatar Oct 09 '24 05:10 sherlyn99

I am using checkm2 v1.0.1, but I am still unable to execute the command. I have downgraded diamond to version 2.0.15. Also, please note to export CHECKM2DB="path/to/database". With these changes, I am able to run it successfully.

AsESCRT avatar Oct 17 '24 07:10 AsESCRT