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ConsensusTME Gene Sets and R Script

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The GSVA function was changed in version 1.50, returning a depreciated function warning. With version 1.52 support for the previous way of calling GSVA was removed entirely causing Consensus TME...

Dear author, My script worked quite well last year, but I got this error this year even I reinstalled the package: ``` > length(intersect(row.names(bulkExpMatrix), row.names(CIBERSORTGeneSet))) [1] 510 > CIBERSORT %...

Hi, thanks all for your work on this package. I'm interested in comparing subgroups across my samples and it's something I've done before using cell fractions from tools like CIBERSORTx....