spatial_lda
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calico
Probabilistic topic model for identifying cellular micro-environments.
Just wonder will you share the code for your new paper neural spatial LDA? Thank you.
Bumps [scipy](https://github.com/scipy/scipy) from 1.3.1 to 1.10.0. Release notes Sourced from scipy's releases. SciPy 1.10.0 Release Notes SciPy 1.10.0 is the culmination of 6 months of hard work. It contains many...
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The `online_lda` module uses `np.float` at https://github.com/calico/spatial_lda/blob/de6b00e5666717505463363607f082da3f25ef30/spatial_lda/online_lda.py#L31 This raises an `AttributeError` with `numpy` 1.24 when importing.
Hi, I wanted to fit the spatial LDA model on ~1.6 million cells (using all cells except ~50000 tumor cells as anchor cells), but I ran into some issues when...
Bumps [numpy](https://github.com/numpy/numpy) from 1.16.4 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...
- Provide description of dataframe/input that enters the model - Provide a list of options of function for data type of input from which user can choose: -- Example: func_type...
