Mistakes in copy number variation of CCLE 2019

[keremw]

Hi, I tried to look into a few cell lines in the CCLE 2019 and noticed some mistakes in copy losses. Specifically in the cell line NCIH1290 I found that genes that show loss as PIK3CA and INPP4B, when I go to the original data that is in Depmap, the losses are not present. It might be due to different ploidies of the cell lines but I wanted to let you know that it might be better to update the results to match the current knowledge. Thank you very much for the the best website that I am using a lot. Best wishes, Kerem

[ritikakundra]

Hi @keremw would it possible to send the oncoprint query for this specific cellline?

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.