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Brady et al. The genomic landscape of pediatric acute lymphoblastic leukemia. Nature Genetics. 2022.

1

https://www.nature.com/articles/s41588-022-01159-z - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this checklist to the issue tracker - [ ] List information...

jjgao

Andre et al. Genomics to select treatment for patients with metastatic breast cancer. Nature 2022.

1

https://www.nature.com/articles/s41586-022-05068-3 - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this checklist to the issue tracker - [ ] List information...

jjgao

Cancer studies updated in this pull request: - ihch_dkfz_2019. # checks For all pull requests: - [ ] Passes validation For a new study (in addition to above): - [...

sbabyanusha

genomic profiles samples count is wrong for fusions

15

GENIE is showing 100% of samples with fusion data, but I know that's not true.  In speaking with @Luke-Sikina this sounds like it may be a code problem and...

tmazor

Labrecque et al. Molecular profiling stratifies diverse phenotypes of treatment-refractory metastatic castration-resistant prostate cancer

2

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6763249/ Study with 98 PDX tumors, includes clinical data, RNA-Seq. - [x] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this checklist to...

SRodenburg

Aggarwal et al. - Clinical and Genomic Characterization of Treatment-Emergent Small-Cell Neuroendocrine Prostate Cancer: A Multi-institutional Prospective Study

2

https://pubmed.ncbi.nlm.nih.gov/29985747/ Study on treatment-emergent small-cell neuroendocrine prostate cancer (t-SCNC) (n=202), includes targeted DNA-Seq and RNA-Seq. Clinical data needs to be requested at the authors. - [x] [create an issue on...

SRodenburg

# What? Fix # . Cancer studies updated in this pull request: - a - . # checks For all pull requests: - [ ] Passes validation For a new...

ritikakundra

Docker compose - https://github.com/cBioPortal/cbioportal-docker-compose uses the 4.1.13 version as the `latest` release. Release 5.0.1 (with SV support) is still in `pre-release` state. **Issue:** There is incompatibility between the data updates...

rmadupuri

https://pubmed.ncbi.nlm.nih.gov/35868306/ - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this checklist to the issue tracker - [ ] List information...

jjgao

Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.24.2 to 1.26.5. Release notes Sourced from urllib3's releases. 1.26.5 :warning: IMPORTANT: urllib3 v2.0 will drop support for Python 2: Read more in the v2.0 Roadmap Fixed...

dependabot[bot]