GSoC

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Extend chart types in study view

27

**Background**: The [cBioPortal](www.cbioportal.org) is an open-access, open-source resource for interactive exploration of multidimensional cancer genomics data sets, which are collected from a multitude of sources such as published research papers,...

inodb

Lollipop plot in Group Comparison

6

**Background**: The [cBioPortal](https://cbioportal.org/) is an open-access, open-source resource for interactive exploration of multidimensional cancer genomics data sets, which are collected from a multitude of sources such as published research papers,...

inodb

[r-client] cBioPortalData: Example Bioconductor Workflow

17

**Background**: The [cBioPortal](http://www.cbioportal.org/) R client opens up cancer sequencing data hosted on the cBioPortal for Cancer Genomics to alternative analysis platforms such as [Bioconductor](https://www.bioconductor.org/), an open source software for bioinformatics...

LiNk-NY

Improve Genome Nexus' Command Line Interface Experience

11

**Background**: [Genome Nexus](https://www.genomenexus.org/) [1] is a tool for the annotation and interpretation of mutations in cancer. [cBioPortal](https://cbioportal.org) leverages Genome Nexus' API to for instance show how a mutation might change...

inodb

Study Comparison Support

15

**Background**: The [cBioPortal](www.cbioportal.org) is an open-access, open-source resource for interactive exploration of multidimensional cancer genomics data sets, which are collected from a multitude of sources such as published research papers,...

Luke-Sikina

Add Mutation Diagram on Study View for Enhanced Mutation Analysis

20

**Background**: The [cBioPortal](www.cbioportal.org) is an open-access, open-source resource for interactive exploration of multidimensional cancer genomics data sets, which are collected from a multitude of sources such as published research papers,...

inodb

cBioPortal Data Collection Automation

7

**Background**: The [cBioPortal](www.cbioportal.org) is an open-access, open-source resource for interactive exploration of multidimensional cancer genomics data sets, which are collected from a multitude of sources such as published research papers,...

inodb

Interactive web tour

32

**Background**: The [cBioPortal for Cancer Genomics](https://aacrjournals.org/cancerdiscovery/article/2/5/401/3246/The-cBio-Cancer-Genomics-Portal-An-Open-Platform) is a publicly available resource for visualizing and analyzing cancer genomics data curated from various sources including public data repositories, published research papers, and...

inodb

Improve Genome Nexus' Mobile and Search Experience

8

**Background**: [Genome Nexus](https://www.genomenexus.org/) [1] is a tool for the annotation and interpretation of mutations in cancer. [cBioPortal](https://cbioportal.org) leverages Genome Nexus' API to for instance show how a mutation might change...

inodb

Broader use of pathway views in cBioPortal

8

**Background**: Pathway diagrams are widely used in genomics to describe changes occurring in signaling pathways resulting from genomic alterations. There are [several tools](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4461095/) available to facilitate the visualization and analysis...

ugurdogrusoz