ST-Net
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bryanhe
Deep learning on histopathology images.
Hi @bryanhe , I had 2 questions 1) Why did you choose to convert JPEG to TIF tiles, are there any specific reasons why JPG patches should be avoided? 2)...
Not sure if @bryanhe or anyone here has encountered the same problem as me during the pre-processing stage: While doing command `$python3 -m stnet prepare spatial`, there is a DecompressionBombWarning...
Hi Bryan, I am trying to run the code. I download the stent folder and put it into /lib/python3.6/site-packages/ . And I also downloaded the whole folder and run the...
Hello everyone! I have a mysterious problem.. Whenever my colleague performed cross-validation with GUP mode, a beeping noise comes..since this happens only while running cross-validation on GPU mode. It is...
python3 -m stnet prepare spatial On running this command I have got this error, any idea how should I tackle this...?? File not found, where can I download it from?...
Hi I am trying to replicate stnet results on the original data. While running python3 -m stnet prepare spatial the code asks for _coords.tsv file which is not present in...
Hello, I tried to download data but it seems this link (http://www.spatialtranscriptomicsresearch.org) does not work. The browser says the server cannot be found. Could you please help me out? Thanks
I have trouble opening/wget http://www.spatialtranscriptomicsresearch.org/. It is just me or the server is down?
Dear Bryan He, Thank you very much for your great model ST-Net. I would like to use your model with the dataset which you used in your paper. But, I...
Hi could you please update your instruction for installation , i couldn't find any installation guide or requirements.txt. every single time i cloned this project and started from beginning
