brianhie
YML file broken?
Error in my conda env creation:
LibMambaUnsatisfiableError: Encountered problems while solving:
- nothing provides requested zlib ==1.2.13 h5eee18b_0
- nothing provides requested xz ==5.2.6 h5eee18b_0
- nothing provides requested typing_extensions ==4.3.0 py39h06a4308_0
- nothing provides requested tk ==8.6.12 h1ccaba5_0
- nothing provides requested sqlite ==3.39.3 h5082296_0
- nothing provides requested setuptools ==65.5.0 py39h06a4308_0
- nothing provides requested scikit-learn ==1.0.2 py39h4dfa638_0
- nothing provides requested readline ==8.2 h5eee18b_0
- nothing provides requested pytorch ==1.12.1 py3.9_cuda11.3_cudnn8.3.2_0
- nothing provides requested python ==3.9.13 haa1d7c7_2
- nothing provides __unix needed by pysocks-1.7.1-pyha2e5f31_6
- nothing provides requested pip ==22.2.2 py39h06a4308_0
- nothing provides requested perl ==5.32.1 2_h7f98852_perl5
- nothing provides requested openssl ==1.1.1t h7f8727e_0
- nothing provides requested ncurses ==6.3 h5eee18b_3
- nothing provides requested mkl ==2022.1.0 hc2b9512_224
- nothing provides requested markupsafe ==2.1.1 py39hb9d737c_1
- nothing provides requested mafft ==7.310 h87f3376_5
- nothing provides requested libstdcxx-ng ==11.2.0 h1234567_1
- nothing provides requested libnsl ==2.0.0 h7f98852_0
- nothing provides requested liblapack ==3.9.0 16_linux64_mkl
- nothing provides requested libgomp ==11.2.0 h1234567_1
- nothing provides requested libgfortran5 ==12.2.0 h337968e_19
- nothing provides requested libgfortran-ng ==12.2.0 h69a702a_19
- nothing provides requested libgcc-ng ==11.2.0 h1234567_1
- nothing provides requested libffi ==3.3 he6710b0_2
- nothing provides requested libcblas ==3.9.0 16_linux64_mkl
- nothing provides requested libblas ==3.9.0 16_linux64_mkl
- nothing provides requested ld_impl_linux-64 ==2.38 h1181459_1
- nothing provides requested intel-openmp ==2022.1.0 h9e868ea_3769
- nothing provides requested hmmer ==3.3.2 h87f3376_2
- nothing provides requested hhsuite ==3.3.0 py39pl5321h67e14b5_5
- nothing provides requested cudatoolkit ==11.3.1 h2bc3f7f_2
- nothing provides requested cryptography ==3.4.8 py39h95dcef6_1
- nothing provides requested cffi ==1.15.1 py39h74dc2b5_0
- nothing provides requested certifi ==2022.12.7 py39h06a4308_0
- nothing provides requested ca-certificates ==2023.01.10 h06a4308_0
- nothing provides requested brotlipy ==0.7.0 py39hb9d737c_1004
- nothing provides requested _openmp_mutex ==5.1 1_gnu
Could not solve for environment specs The following packages are incompatible ├─ _openmp_mutex ==5.1 1_gnu does not exist (perhaps a typo or a missing channel); ├─ brotlipy ==0.7.0 py39hb9d737c_1004 does not exist (perhaps a typo or a missing channel); ├─ ca-certificates ==2023.01.10 h06a4308_0 does not exist (perhaps a typo or a missing channel); ├─ certifi ==2022.12.7 py39h06a4308_0 does not exist (perhaps a typo or a missing channel); ├─ cffi ==1.15.1 py39h74dc2b5_0 does not exist (perhaps a typo or a missing channel); ├─ cryptography ==3.4.8 py39h95dcef6_1 does not exist (perhaps a typo or a missing channel); ├─ cudatoolkit ==11.3.1 h2bc3f7f_2 does not exist (perhaps a typo or a missing channel); ├─ hhsuite ==3.3.0 py39pl5321h67e14b5_5 does not exist (perhaps a typo or a missing channel); ├─ hmmer ==3.3.2 h87f3376_2 does not exist (perhaps a typo or a missing channel); ├─ intel-openmp ==2022.1.0 h9e868ea_3769 does not exist (perhaps a typo or a missing channel); ├─ ld_impl_linux-64 ==2.38 h1181459_1 does not exist (perhaps a typo or a missing channel); ├─ libblas ==3.9.0 16_linux64_mkl does not exist (perhaps a typo or a missing channel); ├─ libcblas ==3.9.0 16_linux64_mkl does not exist (perhaps a typo or a missing channel); ├─ libffi ==3.3 he6710b0_2 does not exist (perhaps a typo or a missing channel); ├─ libgcc-ng ==11.2.0 h1234567_1 does not exist (perhaps a typo or a missing channel); ├─ libgfortran-ng ==12.2.0 h69a702a_19 does not exist (perhaps a typo or a missing channel); ├─ libgfortran5 ==12.2.0 h337968e_19 does not exist (perhaps a typo or a missing channel); ├─ libgomp ==11.2.0 h1234567_1 does not exist (perhaps a typo or a missing channel); ├─ liblapack ==3.9.0 16_linux64_mkl does not exist (perhaps a typo or a missing channel); ├─ libnsl ==2.0.0 h7f98852_0 does not exist (perhaps a typo or a missing channel); ├─ libstdcxx-ng ==11.2.0 h1234567_1 does not exist (perhaps a typo or a missing channel); ├─ mafft ==7.310 h87f3376_5 does not exist (perhaps a typo or a missing channel); ├─ markupsafe ==2.1.1 py39hb9d737c_1 does not exist (perhaps a typo or a missing channel); ├─ mkl ==2022.1.0 hc2b9512_224 does not exist (perhaps a typo or a missing channel); ├─ ncurses ==6.3 h5eee18b_3 does not exist (perhaps a typo or a missing channel); ├─ openssl ==1.1.1t h7f8727e_0 does not exist (perhaps a typo or a missing channel); ├─ perl ==5.32.1 2_h7f98852_perl5 does not exist (perhaps a typo or a missing channel); ├─ pip ==22.2.2 py39h06a4308_0 does not exist (perhaps a typo or a missing channel); ├─ pysocks ==1.7.1 pyha2e5f31_6 is not installable because it requires │ └─ __unix, which is missing on the system; ├─ python ==3.9.13 haa1d7c7_2 does not exist (perhaps a typo or a missing channel); ├─ pytorch ==1.12.1 py3.9_cuda11.3_cudnn8.3.2_0 does not exist (perhaps a typo or a missing channel); ├─ readline ==8.2 h5eee18b_0 does not exist (perhaps a typo or a missing channel); ├─ scikit-learn ==1.0.2 py39h4dfa638_0 does not exist (perhaps a typo or a missing channel); ├─ setuptools ==65.5.0 py39h06a4308_0 does not exist (perhaps a typo or a missing channel); ├─ sqlite ==3.39.3 h5082296_0 does not exist (perhaps a typo or a missing channel); ├─ tk ==8.6.12 h1ccaba5_0 does not exist (perhaps a typo or a missing channel); ├─ typing_extensions ==4.3.0 py39h06a4308_0 does not exist (perhaps a typo or a missing channel); ├─ xz ==5.2.6 h5eee18b_0 does not exist (perhaps a typo or a missing channel); └─ zlib ==1.2.13 h5eee18b_0 does not exist (perhaps a typo or a missing channel).
Any ideas?
I meet the same issue. Here are my solution: step 1: conda config --set channel_priority flexible step 2: conda update -n base -c defaults conda step 3: conda env create -f environment.yml
