brainstorm-tools
BIDS for NIRS
Hello,
Recently, BIDS started to be implemented for NIRS (mainly using the snirf format, already supported by Brainstorm). I was wondering if you could guide me on what part of the code modify to import BIDS dataset containing nirs data such as : https://github.com/rob-luke/BIDS-NIRS-Tapping/tree/388d2cdc3ae831fc767e06d9b77298e9c5cd307b ?
Regards, Edouard
The two files to edit would be process_import_bids.m and process_export_bids.m.
- process_import_bids:
- line 541: add the the modality
- line 608: add the file extension
- line 676: add the sensor types
- If there are new metadata files to import, this might require some more work, otherwise it could be pretty simple
- process_export_bids: I'm not familiar with it, I have never used it. This is only to export unmodified continuous data
Hopefully at some point, we will replace the parsing (import) and the file name generation (export) with methods called from BIDS-Matlab: https://github.com/bids-standard/bids-matlab
Le me know if you're stuck somewhere.
Thanks. Started here: https://github.com/Edouard2laire/brainstorm3/tree/BIDS-nirs
Edit: it seems it's working on this dataset :). Will do more test monday
Hello,
I have been quite busy lately but I should be able to work on it soon. First I need to make a PR to improve a bit the snirf reader. then it will be mainly copying from the previous PR.
ok. Done in #589. Can't believe already one year passed since we open this thread