dyneusr

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While running the following function in the Jupyter notebook: I found the following error:

tamjidimtiaz

DyNeuGraph error due to networkx changes

3

Hello, I am implementing some example code from your website. It seems that it is throwing an error, because the networkx package was updated to use to_numpy_array() instead of to_numpy_matrix()....

ErnestJohnston

Kepler Mapper returns an empty graph

4

See PR [24](https://github.com/braindynamicslab/dyneusr/pull/24) for reports relating to an issue with `kmapper`. Several different reported errors were found to be due to an empty graph being returned by `kmapper`. These errors...

calebgeniesse

Bumps [ipython](https://github.com/ipython/ipython) from 7.16.3 to 8.10.0. Release notes Sourced from ipython's releases. See https://pypi.org/project/ipython/ We do not use GitHub release anymore. Please see PyPI https://pypi.org/project/ipython/ Commits 15ea1ed release 8.10.0 560ad10...

dependabot[bot]

visualize_mapper_stages error in examples

4

Hi there, I'm just getting started and running through your examples here:https://pypi.org/project/dyneusr/ and here: https://github.com/braindynamicslab/dyneusr/blob/master/examples/trefoil_knot/compare_lenses.py Both the versions throw the error: draw_networkx_nodes() got an unexpected keyword argument 'lens' from within...

sciencecasey

networkx needs a lower version 2.2 and matplotlib==2.2.3 Otherwise, there are some confusing errors

dhasegan

Could anyone tell me how to save the shape graph annotated by my custom configuration/layout as SVG from the HTML file generated by DyNeuSR, without manually clicking any HTML links...

atoda0414

Issues converting to DyNeuGraph

2

Hi @calebgeniesse I get the following error when I try to run your haxby examples/tutorials:

BeritSinger

docker app

6

Create docker app to make it easier to install/run dyneusr (e.g. on clusters) ## TODO: - [x] setup docker script (see this [how-to](https://runnable.com/docker/python/dockerize-your-python-application)) - [ ] add integration test -...

calebgeniesse

Problem importing dyneusr; matplotlib TkAgg backend

8

I've been trying to install dyneusr on a singularity image and cannot import it in python. I seem to be having an issue with matplotlib backend TkAgg. I installed using...

jsmentch