BPCells
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bnprks
Scaling Single Cell Analysis to Millions of Cells
Hi Ben, Is it OK to use the `BPCells::linear_operator()` function in production software? Or do you recommend against it? If it is OK to use it, does it help with...
Dear developers, Thank you very much for the very useful package for large datasets. I'm able to use it smoothly through rstudio server on the HPC but I want to...
Hi, Was just curious if there was a plan to upload to CRAN with the release of Seuratv5? I know these are independent packages, but since Seurat v5 depends on...
Greetings, One of my users requested help installing BPCells on our cluster. We use LMOD modules to manage our software. The install configure for BPCells was having a difficult time...
I have recently seen that the counts generated from BPCells have "RenameDims" type (BPCells::RenameDims) unlike what I previously have seen as "MatrixSubset" type (BPCells::MatrixSubset). I believe this because I have...
I've been using this package for some weeks now and it's amazing how it allows to process big datasets in R. After doing some work, I need to export a...
I submitted the same question at https://github.com/satijalab/seurat/issues/8604 I just do not know the source of the issue if its the BPCells library or Seurat. but this issue seems to happen...
``` r library(BPCells) library(Matrix) mock_matrix [7] 1.00e+00 - 136 == -1.35e+02 #> [8] 1.08e+09 - 24 == 1.08e+09 #> [10] 1.00e+00 - 301 == -3.00e+02 #> ... ``` Created on...
I think the recent commits might have done something to break matrix coercion in certain cases. Apologies I don't have a reproducible example, but reverting back to commit 919983d solved...
I took a seq dataset into Seurat to find markers. I run this code:FindMarkers(pbmc, ident.1 = 2, min.pct = 0.25) Result in:Error in FindMarkers.StdAssay(object = data.use, slot = slot, cells.1...
