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Adding more tutorials

Open padix-key opened this issue 1 year ago • 3 comments

The new documentation #552 contains also a revamped tutorial. However, some important sets of functionalities miss a tutorial:

  • [ ] tantan application interface: tutorial/application/tantan
  • [ ] sra-tools application interface: tutorial/application/sra
  • [ ] ViennaRNA application interface: tutorial/application/viennarna
  • [ ] Uniprot database: tutorial/database/uniprot
  • [ ] PubChem database: tutorial/database/pubchem
  • [x] Sequence profiles: tutorial/sequence/profiles
  • [ ] Chain, residue and molecule utilities: tutorial/structure/segments
  • [ ] Nucleotide structure analysis (base pairs, dot-bracket): tutorial/structure/nucleotide
  • [ ] MOL and SDF format: part of tutorial/structure/io

Note the new scope for tutorials: https://kunzmann.uber.space/latest/contribution/documentation.html#documentation-structure

padix-key avatar Jun 29 '24 10:06 padix-key

As you are the authors of the respective functionality:

@t0mdavid-m Would you like to write the tutorial/structure/nucleotide and/or tutorial/application/viennarna tutorial?

@MaxGreil Would you like to write the tutorial/database/uniprot and/or tutorial/sequence/profiles tutorial?

padix-key avatar Jun 29 '24 10:06 padix-key

Happy to do both the structure/nucleotide and application/viennarna tutorials!

t0mdavid-m avatar Jun 29 '24 11:06 t0mdavid-m

As part of enabling alignments for sequence profile via PositionalSequence (#655), I will also add the tutorial/sequence/profiles tutorial

padix-key avatar Sep 08 '24 12:09 padix-key