bionitio-python
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bionitio-team
Demonstrating best practices for bioinformatics command line tools
[Python Black](https://github.com/psf/black) is a package that formats Python code in a very strict manner. Whilst it can be used to check code (eg. for CI tests) the main idea is...
I'd like to add [pytest](https://docs.pytest.org/) tests. This is a much more natural and easier-to-maintain way to test Python tools than *nix script-based tests. It's good for both unit and functional...
Reformatted all Python code using [Black](https://github.com/psf/black) and set up tests and documentation. I also reformatted the main Readme quite a bit to adhere to standard Markdown syntax (eg. language specification...
Two things in this PR: ### A bit of a clean-up on `setup.py` * Use `setuptools` instead of `distutils` (not sure if you had a specific reason to use `distutils`?)...
Adding a `.gitignore` file for Python. x-ref https://github.com/bionitio-team/bionitio/issues/79 This file is stolen from another project and is mostly the [boilerplate file](https://github.com/github/gitignore/blob/master/Python.gitignore) GitHub file. Much of it is irrelevant as a...
Hi! Great talk at BOSC2020 🎉 Following our brief chat on BOSC Discord, I thought I would offer some help in switching from Travis CI to GitHub Actions. We've made...
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Demonstrating best practices for bioinformatics command line tools