slalom
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bioFAM
I get the following error: `Traceback (most recent call last): File "../../../scripts/slalom_AVM.py", line 2, in import slalom File "/cluster/home/rgupta/miniconda3/lib/python3.6/site-packages/slalom/__init__.py", line 11, in from .utils import (initFA, load_hdf5, load_txt, preTrain, plotLoadings,...
Hi, I'm trying to run slalom ('1.8.0') on a fairly large dataset ~12K cells x 20K genes with 50 annotated factors. I used scater + scran to qc the data...
This small edit makes the package compatible with the newer versions of sklearn.
https://github.com/bioFAM/slalom/blob/547a56316e5c3ccc63e592eb907dc53b00212466/slalom/core.py#L414 I'm getting an error from line 414 in core.py AttributeError: 'float' object has no attribute 'exp' I believe the cause is that `u_qm` is all 'inf' and this seems...
Hi I tried saving a `Rcpp_SlalomModel` object in an `RData` file, and found out that C++ pointer problems mean that it doesn't work when you then try to reload it....
I'm useing numpy 1.13.1 and the error written in the title occured in slalom/ipynb/f-scLVM_Tcells.ipynb. Tentatively I replaced `if cols == None:` into `if cols != SP.ndarray:` in the line 147...
I am encountering this message while loading the data files. I don't understand why none of the terms are loaded from the annotation file. `Data file loaded 0 terms out...
