MOFA

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how to install the package 'MOFAtools' ?

yuan596

Dear developpers, I noticed you defined a new predict function which overrides the existing predict function. This can be annoying, I suggest you use proper S3 dispatching, i.e. name your...

sthawinke

Hi, After the training I got this error: Error in py_call_impl(callable, dots$args, dots$keywords) : UnicodeEncodeError: 'ascii' codec can't encode character '\u03b5' in position 5: ordinal not in range(128) Do you...

ClaireXinSun

Hi. I have appreciated your published article about MOFA and your MOFA-related documents/tuorials. After I got the plot from plotVarianceExplained, I want to improve the plot of VarianceExplained in ggplot2:...

Chenjiani1112

Problem to use mofaOBJECT

2

Good afternoon, I am trying to use MOFA with my own data but when I create a MOFA object and try to set the environment to run MOFA I get...

geraldocantelli

Different data processing on metabolomics, I get different R2.

7

Hi. I have three multi-omics datasets of RNA seq (vst normalization), DNA methylation (beta value) and plasma metabolomics. I normalized my metabolite data with the total sum of all detected...

Chenjiani1112

AssertionError: dimensionality mismatch

1

My Dataset is Like this... **SNP**  **Gene Expression**  **Other Dataset**  **I have two question to mofapy/run/python_template.py** ### First ```python ep.set_data(data) ``` When the above code is executed,...

wjddyd66

Failure to Capture Common Sources of Variance in Data

1

Hi, I've tried MOFA with several datatypes, some having ~50 samples while others have 15 or 22 samples. Here's an overview of the data:  RNA.vst = vst transformed RNA-seq...

whitleyo

Error in py_call_impl(callable, dots$args, dots$keywords) : AttributeError: 'NoneType' object has no attribute 'getExpectations'

1

Hello Guys I am having that error, please could someone help me with this [1] "No output file provided, using a temporary file..." ########################################################### ### __ __ ___ _____ _...

FfKB

Since this version will not be updated, maybe you can archive it?

artur-sannikov