Ben Webb

One proposal from last week's [Skype meeting](https://github.com/ihmwg/IHM-dictionary/wiki/IHM-Meeting-Summary-Jun-28-2018) was to use the extension `.ihm.cif` for these files. This allows for packages such as ChimeraX to recognize the files as using the...

The "Fast" and "Release" nightly builds at https://integrativemodeling.org/nightly/results/ (which are also used for internal lab or Wynton workflows via `module load imp/nightly`) now build only for Python 3. The corresponding...

Warning sent out on the [IMP-users mailing list](https://salilab.org/mm/hyperkitty/list/[email protected]/thread/WQ5S3VMFKMPLPSBPVXELDJ3ZRWWA5SFZ/).

To the best of my knowledge, no. In the IMP world we do often represent proteins as sets of Gaussians (to more easily fit them against EM density represented as...

If your objective is just to make a syntactically correct IHM mmCIF file, the [python-ihm library](https://github.com/ihmwg/python-ihm) is the easiest way to do it - [here's a worked example](https://github.com/ihmwg/python-ihm/blob/master/examples/simple-docking.py). An actual...

> @benmwebb, would it be possible to generate an example of a low resolution structure that uses a Gaussian object representation? Sure, but it would certainly be a fantasy -...

0ae384d provides a templated method to get elements from an an `IMP::Array` (e.g. accessing the two indexes in a `ParticleIndexPair`). This moves the bounds check from runtime to compile time....

This is not numerical instability. It's because the EM code caches the RMS and dmean and does not clear this cache when adding two maps together, so incorrect values are...

The `IMP.mmcif` module should now be able to generate a fully-compliant IHM mmCIF or BinaryCIF file from an IMP `Model` (or RMF file) that contains suitable provenance decorators. These do...

I'm not aware of any numerical instabilities involving creation of reference frames with latest IMP, so closing.