Tutorial Issues

Open multimeric opened this issue 4 years ago • 1 comments

The tutorial PDF is very helpful, I just noticed some issues in it:

For the Conserved Columns section we have but I think it should be 1 + 1 in red and blue in order to get 2/9
For Non-Gaps, the equation seems to be calculating the proportion of gaps, the opposite of what it says:
Finally as mentioned elsewhere, I think the benchmark script no longer exists:

Oct 21 '21 04:10 multimeric

I noticed your tutorial on using pyMSA: https://github.com/benhid/pyMSA/blob/master/resources/tutorial-pymsa.pdf

refers to a script that is actually missing from the repo (https://github.com/benhid/pyMSA/blob/master) itself, specifically a python file called: benchmark.py

In the tutorial you use it as follows: benchmark.py --input ~/msa.txt

However, benchmark.py does not exist anywhere in this repo.

Nov 23 '21 14:11 a1ultima