Ben Fulton
Ben Fulton
Hi, Are you still having an issue with loading your large tree? Can you send the tree that is failing?
You're correct, CAFE rounds to the closest integer and if that integer is 0, it won't be able to do the calculations. We'll address this in a future release.
A pull request would be fine. Depending on the lengths of the other branches, CAFE still may not be able to calculate the probabilities, but certainly crashing is not a...
No. We will handle fractional branch lengths in the next major version.
Hi @rdriver, please direct questions about CAFE to the Google group here: https://groups.google.com/forum/#!forum/hahnlabcafe . I asked your question there and multiplying the branch lengths should be fine. You just have...
Can you share your tree and input files? Or send them directly to me if you prefer. What lambda did you input manually?
This appears to be a bug in CAFE in handling family sizes over 1000. I believe you only have one, in the very first family, so if you remove that...
This says the configure step found a math library, but the make step is unable to read it. What math library do you have on your system?
You need a space after the word "tree". If possible you should switch to [CAFE 5](https://github.com/hahnlab/CAFE5) though. This project is very minimally supported now.
This is still forthcoming.