input fasta files

Open ngotoor2 opened this issue 8 years ago • 4 comments

Hi, Can we use .fasta as input read files? Is it hard-coded to work only with only .fastaq files as input? If yes, where is the code for that?

Aug 08 '17 18:08 ngotoor2

Hello,

Yes, the present implementation works only with fastq. It is something we have been intending to fix for some time, since we internally convert fastq to fasta before aligning the sequences. I will try to push a patch this week to fix this.

Sorry for the hassle. -Miten

Aug 08 '17 18:08 mitenjain

Awesome and thanks! I'll check back later this week for any updated changes.

Aug 08 '17 21:08 ngotoor2

Hi Miten, Just wondering if the implementation supports .fasta as input now?

Oct 02 '17 15:10 ngotoor2

Hello,

Sorry for the delay. I'll have that patched up in a couple of days. I'll let you know when done.

Oct 02 '17 17:10 mitenjain