ntJoin

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Installation failed / dependencies

5

Hi, I tried to install ntJoin via bioconda, but it fails with dependencies error. I created an empty environment, so the problem is in the dependencies by themself. I could...

steinbrl

High percentage of ambiguous bases.

2

Hi I am trying to assemble genomes of other strains using another strains reference and am getting good matches from what I can see using mauve. I first created contigs...

keith-harrison

Advice. Use only chromosomes as reference or the entire assembly?

1

Hi! I'm trying to us ntJoin to scaffold an input PacBio CLR genome assembly using a chromosome level assembly of a closely related species as a refence. 1) I would...

V-JJ

Error: No module named 'packaging'

2

Hi, I installed ntJoin using conda. I thought it would work, but it failed when I tried running it with this code: `ntJoin assemble target=myse-hapog.fasta target_weight=1 references='myse_female.fasta' reference_weights='2' k=32 w=500`...

desmodus1984

Suggestions on how to set up weights

5

Hi, I used short and long-reads to assemble a bat genome. I used pomoxis to assemble it using a reference, and I got 98 contigs. Busco score was 97%, I...

desmodus1984

Overlap detection and edge weight

5

Hi I'm working on scaffolding assembled contigs using ntLink and ntJoin. For this I have a set of long reads and four draft contig-level assemblies that were assembled using combinations...

tbusschau

Running - make error

10

Hi, I just installed ntJoin and I want to scaffold an assembly we got from the sequencing company with one published before. I ran this code, and I got this...

desmodus1984