Alexey Sergushichev

Update: I've resolved the additional questions:  ```r library(ggplot2) library(ggforce) library(data.table) load(gzfile("border_example.rda.gz")) ggplot(data, aes(x=UMAP_1, y=UMAP_2)) + geom_point(color="grey") + geom_shape(data=maskTable, aes(group=group, color=cluster), linewidth=1, fill=NA, expand=unit(-1, "pt")) + geom_mark_hull(data=maskTable, fill = NA,...

> However, I don't need to actually build a hull, since I have already have a proper polygon, and I don't want to have an additional dependency. I realized, that...

@ppaxisa the border algorithm is available in https://github.com/alserglab/mascarade package

@EzlinRye Thanks! I couldn't figure out how to enable it for DDG. I once did it on my other machine, but completely forgot. Unfortunately there is no info about this...

To highlight the idea, here are the two versions, from the master branch (first image) and with zero offset (second image). Notice, how "DC" and "Platelet" annotations move far away...

For row profile plots you can set the color to come from the gene name, then the legend should show up. Is that what you're looking for? For boxplots this...

This should be fixed by https://github.com/alserglab/fgsea/commit/2d0c71a046d71d78eb5625b76f5db8de8c811159 (available from the latest GitHub version)

Hi, Could you please provide more context on how did you get the first error? `createES` is an internal function and is not exported, so that the behavior on the...

Ah, I see. `createES` is internal function and the corresponding documentation and examples are only for internal usage and aren't supposed to be run manually. Actually we need to add...

I realized that I forgot to include actual labels into the example :) Here is a better one: ```{r} library(ggplot2) library(ggforce) shape1