poretools
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arq5x
a toolkit for working with Oxford nanopore data
I try to run ARG_OAP for meta-genomic shotgun sequencing data. I am getting this following error. raise CalledProcessError(retcode, process.args, subprocess.CalledProcessError: Command '['blastn', '-db', 'sample16.1.fasta', '-query', 'output/extracted.fa', '-out', 'output/blastout.txt', '-outfmt', '6...
Here is a version of poretools that will work with python 3
Hi, Would appreciate any help. Running a windows WSL version of ubuntu. Got conda and installed all the prerequisites including seaborn. But when installing poretools, shows error can't locate seaborn....
Kindly help. I am trying to install poretools. I have clone from github and now getting an error when setting up ( python setup.py install) as per installation procedure. The...
This project looks VERY dead. Is it? Why is it not archived and superseded by something else? It seems very dangerous to be relying on something that hasn't addressed an...
Hello, I'm trying to use the poretools combine utility across 10 different replicates. It worked perfect for 9 of the 10, but the last one is throwing an odd error:...
Hello, I performed a direct RNA-Sequencing with Oxford Nanopore and I want to analyze the read length in galaxy with poretools of these FAST5-files. But I got this failure: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/lib/python2.7/site-packages/h5py/__init__.py:36:...
  Here you can see, I am not sure whether the new fast5 puts the events in the summary folder rather than the BaseCalled_template folder Do you have any...
Attempting to install to Python3 ``` $ pip3 install git+https://github.com/arq5x/poretools.git Collecting git+https://github.com/arq5x/poretools.git Cloning https://github.com/arq5x/poretools.git to /tmp/pip-w1sw56yo-build Complete output from command python setup.py egg_info: Traceback (most recent call last): File "",...
