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Installation not working with python 3.13
Description
Installation not working with python 3.13
How to reproduce the bug
(.venv_edsnlp) acohen:~/CodeUbuntu/edsnlp$ pip install -e '.[dev,setup,ml]'
Obtaining file:///home/acohen/CodeUbuntu/edsnlp
Installing build dependencies ... error
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> [151 lines of output]
Ignoring numpy: markers 'python_version == "3.7" and platform_machine not in "arm64|aarch64|loongarch64" and platform_system != "AIX" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.7" and platform_machine == "arm64" and platform_system == "Windows" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.7" and platform_system == "AIX" and platform_machine != "loongarch64" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.8" and platform_machine not in "arm64|aarch64|s390x|loongarch64" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "arm64" and platform_system == "Windows" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "s390x" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.6" and platform_machine != "loongarch64" and platform_python_implementation == "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.7" and platform_machine == "aarch64" and platform_system != "AIX" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "aarch64" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.9" and platform_machine == "arm64" and platform_system == "Windows" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.9" and platform_system not in "OS400" and platform_machine not in "arm64|loongarch64" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.7" and platform_machine != "loongarch64" and platform_python_implementation == "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.7" and platform_machine == "arm64" and platform_system == "Darwin" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "arm64" and platform_system == "Darwin" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.9" and platform_machine == "arm64" and platform_system == "Darwin" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.10" and platform_machine != "loongarch64"' don't match your environment
Ignoring numpy: markers 'platform_machine == "loongarch64" and python_version >= "3.8" and python_version < "3.11" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.8" and platform_machine != "loongarch64" and platform_python_implementation == "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.11"' don't match your environment
Ignoring numpy: markers 'python_version == "3.9" and platform_system == "OS400" and platform_machine != "loongarch64" and platform_python_implementation != "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.9" and platform_python_implementation == "PyPy"' don't match your environment
Ignoring numpy: markers 'python_version == "3.12"' don't match your environment
Collecting setuptools
Using cached setuptools-75.6.0-py3-none-any.whl.metadata (6.7 kB)
Collecting cython>=0.25
Using cached Cython-3.0.11-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.2 kB)
Collecting spacy<3.8,>=3.2
Using cached spacy-3.7.5.tar.gz (1.3 MB)
Installing build dependencies: started
Installing build dependencies: finished with status 'error'
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> [106 lines of output]
Ignoring numpy: markers 'python_version < "3.9"' don't match your environment
Collecting setuptools
Using cached setuptools-75.6.0-py3-none-any.whl.metadata (6.7 kB)
Collecting cython<3.0,>=0.25
Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB)
Collecting cymem<2.1.0,>=2.0.2
Using cached cymem-2.0.10-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
Collecting preshed<3.1.0,>=3.0.2
Using cached preshed-3.0.9.tar.gz (14 kB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Collecting murmurhash<1.1.0,>=0.28.0
Using cached murmurhash-1.0.11-cp313-cp313-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
Collecting thinc<8.3.0,>=8.2.2
Using cached thinc-8.2.5.tar.gz (193 kB)
Installing build dependencies: started
Installing build dependencies: finished with status 'error'
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> [70 lines of output]
Ignoring numpy: markers 'python_version < "3.9"' don't match your environment
Collecting setuptools
Using cached setuptools-75.6.0-py3-none-any.whl.metadata (6.7 kB)
Collecting cython<3.0,>=0.25
Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB)
Collecting murmurhash<1.1.0,>=1.0.2
Using cached murmurhash-1.0.11-cp313-cp313-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
Collecting cymem<2.1.0,>=2.0.2
Using cached cymem-2.0.10-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
Collecting preshed<3.1.0,>=3.0.2
Using cached preshed-3.0.9.tar.gz (14 kB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Collecting blis<0.8.0,>=0.7.8
Using cached blis-0.7.11.tar.gz (2.9 MB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Collecting numpy<2.0.0,>=1.25.0
Using cached numpy-1.26.4.tar.gz (15.8 MB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Installing backend dependencies: started
Installing backend dependencies: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'error'
error: subprocess-exited-with-error
× Preparing metadata (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [20 lines of output]
+ /home/acohen/envs/.venv_edsnlp/bin/python /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074/vendored-meson/meson/meson.py setup /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074 /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074/.mesonpy-thoe510l -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074/.mesonpy-thoe510l/meson-python-native-file.ini
The Meson build system
Version: 1.2.99
Source dir: /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074
Build dir: /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074/.mesonpy-thoe510l
Build type: native build
Project name: NumPy
Project version: 1.26.4
../meson.build:1:0: ERROR: Unknown compiler(s): [['cc'], ['gcc'], ['clang'], ['nvc'], ['pgcc'], ['icc'], ['icx']]
The following exception(s) were encountered:
Running `cc --version` gave "[Errno 2] No such file or directory: 'cc'"
Running `gcc --version` gave "[Errno 2] No such file or directory: 'gcc'"
Running `clang --version` gave "[Errno 2] No such file or directory: 'clang'"
Running `nvc --version` gave "[Errno 2] No such file or directory: 'nvc'"
Running `pgcc --version` gave "[Errno 2] No such file or directory: 'pgcc'"
Running `icc --version` gave "[Errno 2] No such file or directory: 'icc'"
Running `icx --version` gave "[Errno 2] No such file or directory: 'icx'"
A full log can be found at /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074/.mesonpy-thoe510l/meson-logs/meson-log.txt
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
Your Environment
- Operating System: Distributor ID: Ubuntu Description: Ubuntu 24.04.1 LTS Release: 24.04 Codename: noble
Wiht python 3.9, the following dependencies should be installed before (it is not specified in the doc) :
sudo apt-get install gcc
sudo apt-get install g++