edsnlp
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aphp
Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
## Description New NER pipeline to identify ADICAP codes ## Checklist - [x] If this PR is a bug fix, the bug is documented in the test suite. - [x]...
# Draft ### Starting example: When looking for ADICAP codes, some notes showed multiples codes: `"adicap : OHGSA7B1, OHGSA7B3"` Using he `ContextualMatcher` as of today, only the last code will...
## Description Differentiate results of type duration and datetime. ### Identified problem: When applying the dates pipeline in batch, we obtain in the same column of the result dataframe objects...
## Description This PR proposes a first _trainable_ pipeline :tada: The pipeline here is a trainable entity qualifier, that can automatically set a custom `ent._.qualifiers` extension. Said extension can be...
## Description Add pipeline components to handle rule-based pseudonymisation. 1. Handle static rules, such as detection of phone numbers, mail addresses, SSN, etc 2. Handle contextual information, using `nlp.pipe(zip(docs, contexts),...
## Description We might benefit from using a parse tree. Parsing is a most transverse task, and could provide an easy way to create baselines for many pipeline components (qualifiers,...
## Feature type New qualifier pipeline, overtaking and improving the `eds.family` component. ## Description As of today, EDS-NLP only equiped to detect family members. We should add detection of other...
## Feature type Matcher pipeline to handle the single label/multiple subconcepts use-case. ## Description As discussed in #58, we would certainly benefit from having EDS-NLP handle the nitty-gritty detail of...
## Score # Description We analysed the performance of the pipeline `eds.charlson` over 100 documents extracted from the Bordeaux CHU medical datawarehouse. We compare Charlson score extracted by edsnlp pipeline...
## Feature type Modification of the pollution matcher to be more center-specific (eg AP-HP, Bordeaux, etc). ## Description Light modification of the `eds.pollution` pipeline to separate patterns between the main...