Alexey Nesvizhskii
Alexey Nesvizhskii
Hi Brian, Thanks for sending this. I will forward to the group, and we will read the paper as a start. Hope FragPipe works OK for you, and we always...
Hi Brian, I agree that when using samples that are very different, like your case, maxLFQ is not good. For that reason, for AP-MS data (with bait IP and negative...
Thanks. We added to the list of think we can try to implement
Yes, that’s a good idea. I think MaxQuant reports something like that. We can discuss with Felipe if philosopher can generate some simple summary table. Thanks for using our tools!...
Felipe, does mzID represents the filtered PSM.tsv tables, and the razor protein assignment for each shared PSM? I think (?) we need to have mzID files represent the final analysis...
Is the memory issue in MSFragger? DIA-Umpire does not do anything with the database. This must ne MSFragger issue? From: kguehrs ***@***.***> Sent: Thursday, June 10, 2021 4:15 AM To:...
Ok, I see that the memory error is in DIA-Umpire I also see you changed the defaults. Given that you only have 16Gb RAM, please try with NoMissedScan = 1...
So do we have any resolution to Dr. Karl-Heinz Gührs's issue with Split generated files deleted? Do we at least know that it is unrelated to the problem that the...
@mwfoster – we have a few questions. What version of Philosopher did you use? Did you add contaminants using philosoper? Did you use TMT-Integrator? I think we need a bit...
@mwfoster did we fix this issue?