straw
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aidenlab
Extract data quickly from Juicebox via straw
**Describe the bug** Hello, just wanted to report that in order to complete the compilation, I needed to manually modify the straw.cpp file after I cloned the repository on my...
(autohic) C:\Users\Administrator>pip install hic-straw -i https://pypi.tuna.tsinghua.edu.cn/simple Looking in indexes: https://pypi.tuna.tsinghua.edu.cn/simple Collecting hic-straw Using cached https://pypi.tuna.tsinghua.edu.cn/packages/8e/ec/431c76970f8973ea5937a9b5f2d1689a641b3fe6475246a32451274fa2dd/hic-straw-1.3.1.tar.gz (18 kB) Preparing metadata (setup.py) ... done Collecting pybind11>=2.4 (from hic-straw) Using cached https://pypi.tuna.tsinghua.edu.cn/packages/06/55/9f73c32dda93fa4f539fafa268f9504e83c489f460c380371d94296126cd/pybind11-2.11.1-py3-none-any.whl (227...
It’s my understanding, that the Python package can [be installed with `pip install strawC`](https://pypi.org/project/strawC/). It’d be great if that was mentioned in the README.
Hello, When I run `straw('KR', hic_file, 'LR994552.1', 'LR994551.1','BP', res))` on a `.hic` file generated by yahs, the command runs fine. However, when I try it on a `.hic` file which...
Hi, I have been trying out straw to plot my hic map. I would like to get a similar image to the one I get when I load the .hic...
hic = hicstraw.HiCFile(filepath) hic.getChromosomes() hic.getGenomeID() hic.getResolutions() mzd = hic.getMatrixZoomData(chrom1, chrom2, data_type, normalization, "BP", resolution) numpy_matrix = mzd.getRecordsAsMatrix(gr1, gr2, gc1, gc2) records_list = mzd.getRecords(gr1, gr2, gc1, gc2) 这里的gr1, gr2, gc1, gc2可以是0、整条染色体的长度吗？（我输入了：0，248956422，0，248956422，去查看第一条染色体的信息，会报错）...
**Describe the bug** I tried to use pip to install this package on windows, but I got the following errors. **To Reproduce** Steps to reproduce the behavior: 1. set INCLUDE=%INCLUDE%;D:\apps\anaconda3\Library\include...
Collecting hic-straw Using cached https://files.pythonhosted.org/packages/a3/f1/19bb1d40f659e5daa98ba6a2d845c1203ec45661c1b855958643ccc37c66/hic-straw-1.1.3.tar.gz Requirement already satisfied: pybind11>=2.4 in c:\user (from hic-straw) (2.7.1) Installing collected packages: hic-straw Running setup.py install for hic-straw: started Running setup.py install for hic-straw: finished...
**Describe the bug** Can not install hic-straw on linux **To Reproduce** - Create a clean conda environment (tried python 3.8, for example) - Activate the environment - Run `pip install...
**Describe the bug** A clear and concise description of what the bug is. **To Reproduce** Steps to reproduce the behavior: 1. Go to '...' 2. Click on '....' 3. Scroll...
