how to apply SCENIC to another species(zebrafish) except for human,mouse and fly?

Open rlawltn9718 opened this issue 3 years ago • 1 comments

I've generated cistarget database for zebrafish. but I'm stopped at the initializeScenic step. May I ask how to bypass the requirement in initializeScenic() that 'org' should be one of: mgi, hgnc, dmel?

Jan 04 '23 06:01 rlawltn9718

motifAnnotations_mgi<-motifAnnotations_yourcustom
scenicOptions@settings$db_annotFiles<-'./motifAnnotations_yourcustomdatafile.txt'

use getDbAnnotations(scenicOptions) to chek it

Aug 08 '24 02:08 jiangpuxuan