Warning in .AUCell_calcAUC(geneSets = geneSets, rankings = rankings, nCores = nCores,

[rraky]

scenicOptions <- runSCENIC_3_scoreCells(scenicOptions, exprMat_log ) 15:20 Step 3. Analyzing the network activity in each individual cell Number of regulons to evaluate on cells: 12 Biggest (non-extended) regulons: Junb (82g) Fos (29g) Irf7 (25g) Stat1 (19g) Fosb (11g) Jun (12g) Quantiles for the number of genes detected by cell: (Non-detected genes are shuffled at the end of the ranking. Keep it in mind when choosing the threshold for calculating the AUC). min 1% 5% 10% 50% 100% 6 8 9 10 12 16 Warning in .AUCell_calcAUC(geneSets = geneSets, rankings = rankings, nCores = nCores, : Using only the first 8 genes (aucMaxRank) to calculate the AUC. Error in .AUCell_calcAUC(geneSets = geneSets, rankings = rankings, nCores = nCores, : Fewer than 20% of the genes in the gene sets are included in the rankings.Check wether the gene IDs in the 'rankings' and 'geneSets' match.

[npees1]

Hi, I got the same error and I would like to know how you resolved it. Thanks.