Error : runSCENIC_3_scoreCells

[lagom2728]

Currently, the error "Error in readRDS(tSNE_fileName) : bad 'file' argument" in the runSCENIC_3_scoreCells function seems to be occurring to other users as well. Has this part been resolved??

If it hasn't been resolved, how can I fix it?? It's so urgent, developers, please help.

[s-aibar]

Dear @lagom2728

Can you indicate which other users are having this same issue? (maybe #227 ? ) I cannot reproduce the error myself...

[AnjaliS1]

I have also just came across the same issue.

[ZachLW]

Hi, These codes rescue me: scenicOptions@settings$defaultTsne$aucType <- "AUC" scenicOptions@settings$defaultTsne$dims <- 5 scenicOptions@settings$defaultTsne$perpl <- c(5,15,50) scenicOptions <- runSCENIC_3_scoreCells(scenicOptions, exprMat_log)

Hope them help.

[anshrly]

scenicOptions@settings$defaultTsne$perpl <- c(5,15,50)

That's really usefull! thank u !