F-seq
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aboyle
A Feature Density Estimator for High-Throughput Sequence Tags
@aboyle Found the following error after cloning this git repo ``` > ant Buildfile: $HOME/bin/F-seq/build.xml prepare: [mkdir] Created dir:$HOME/bin/F-seq/build~ [mkdir] Created dir:$HOME/bin/F-seq/build~/classes [mkdir] Created dir: $HOME/bin/F-seq/dist~ compile: [javac] $HOMEa/bin/F-seq/build.xml:59: warning:...
F-seq 1.85 craches on one of my bed files (BAM ==> BED) with an out of memory error (F-Seq is allowed to use 240 GiB of memory) (the other 11...
It seems that Fseq doesn't like small chromosomes! chrUn_KN150693v1: first=191, last=1957 .................... ..................... chrUn_KN150693v1: Completed in 0.001 seconds. chrUn_KN150693v1: Found 2 peaks. ----------------------- chrUn_KN149957v1: first=166, last=173 .................... Exception in thread...
It would be nice if fseq can convert the wig output files also to bed format. Now you need to run fseq 2 times to have the output in wig...
Hi, I'm trying to run Fseq for Mouse FAIRE samples. I can't find how to produce the mappability of mm9 in the bff format that Fseq requires. Could you help...
