ChIA-PET Long Range Interaction can't be modified / Add tracks

[LucoLab]

I have deployed GIVE with GIVE-Docker. From the ChIA-PET Long Range Interaction example running, I started to remove and add new stuffs in this docker container.

But the panel on the left keep loading without any error. It doesn't show any dataset I added. Whereas when I'm doing , my changes look ok. bash list_tracks.sh -u root -p Admin2015 -r hg38

| |___ hg38 | |___ BED | |--- tad_boundaries | |___ genes | |--- knownGene | |___ genomic_interactions |--- MCF10A.Hic.2015

Summary: There are 3 track groups in reference genomes "hg38": BED,genes,genomic_interactions

I restarted docker several times. UPDATE : I finally change /var/www/index.html accordindgly to my change and it works.

But still I can't add new tracks from link for example.

It seems impossible to add tracks by uploading or by giving a link. The button Add Track is always freezed.

This is what I have done.

sudo docker cp /home/jp/Desktop/giveInteraction.MCF10a give:/tmp/giveInteraction.MCF10a sudo docker cp /home/jp/Desktop/allchromosomesTADboundaries.sorted.bed give:/tmp/allchromosomesTADboundaries.sorted.bed

sudo docker exec -it give /bin/bash

bash list_tracks.sh -u root -p Admin2015 -r hg38 bash remove_data.sh -u root -p Admin2015 -r hg19 -a CONFIRM

bash initial_ref.sh -u root -p Admin2015 -r hg38 -s "Homo sapiens" -c human -f /tmp/example_data/cytoBandIdeo.txt

bash add_trackGroup.sh -u root -p Admin2015 -r hg38 -g "genes" -l "Genes" -o 1 -s 0 bash add_trackGroup.sh -u root -p Admin2015 -r hg38 -g "genomic_interactions" -l "Genomic interactions" -o 3 -s 0 bash add_trackGroup.sh -u root -p Admin2015 -r hg38 -g "BED" -l "beds" -o 3 -s 0

bash add_geneAnnot.sh -u root -p Admin2015 -r hg38 -t "knownGene" -g "genes" -l "UCSC known genes annotation" -s "UCSC Genes" -o 1 -v full -f /tmp/example_data/knownGene.txt

bash add_track_interaction.sh -u root -p Admin2015 -r hg38 -t "MCF10A.Hic.2015" -g "genomic_interactions" -l "MCF10A.Hic.2015" -s "MCF10A.Hic.2015" -o 1 -v full -f /tmp/giveInteraction.MCF10a bash add_track_bed.sh -u root -p Admin2015 -r hg38 -t tad_boundaries -g "BED" -l "tad_boundaries MCF10A.Hic.2015" -s "tad_boundaries" -o 2 -v pack -f /tmp/allchromosomesTADboundaries.sorted.bed