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error in dec_cci_all and dec_cci

Open z0402 opened this issue 8 months ago • 0 comments

Hi, When I used dec_cci and dec_cci_all to analysis my data about cell-cell communications and it pops errors

obj <- createSpaTalk(st_data = st_data, st_meta = st_meta , species = "Human",if_st_is_sc = F,spot_max_cell = 1,celltype = celltype) Warning messages: 1: In asMethod(object) : sparse->dense coercion: allocating vector of size 3.8 GiB 2: In createSpaTalk(st_data = st_data, st_meta = st_meta, species = "Human", : celltype of NA has been replaced by NA obj <- find_lr_path(object = obj, lrpairs = lrpairs, pathways = pathways) Checking input data Begin to filter lrpairs and pathways Done obj <- dec_cci_all(object = obj) Note: there are 15 cell types and 211 pair-wise cell pairs Begin to find LR pairs Error in serialize(data, node$con) : 链结书写发生了错误 obj <- dec_cci(object = obj, celltype_sender = 'Fibroblast',celltype_receiver = 'T_2') Error in celltype_dist[, cell_sender$cell[j]] : 下标出界

z0402 avatar May 05 '25 08:05 z0402