SpaTalk

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Hello, when I use plot_lr_path to generate the downstream regulatory network of ligand and receptor pairs, a large number of genes and TFS will be generated. How to screen and...

fancycha

您好！请问使用plot_ccdist画图时，如何保持图片的纵横比

ZJU-TingYun

Hi, thanks for your tools! Since the stereo-seq data is single-cell level, I follow the tutorial of single-cell ST data, using the custom LRs and pathway in the "Data". But...

cynthier

Very useful tool. I want to use SpaTalk in our lab. I am working on the 10x visium ST dataset (multiple samples : 2 replicate each). I split my integrated...

archanabhardwaj

qs111233

您好， 我在使用您的工具时，使用dec_cci函数对CD4T_Treg_FOXP3（sender）和Mph_FOLR2（receiver）进行研究时得到了如下结果（一行NA），上面19行是用dec_cci_all得到的结果：  请问为什么出现这样的情况？ 谢谢！

buwcx123

Hi, Thanks for the amazing tool. In the data folder -> pathway.rda is provided, can you please provide the script or the steps how this was created? Thanks

OnkarMulay

Does dec_cci_all() exclude same-cell-type interactions? How to include autocrine pairs?

1

Dear Spatalk Developers, Thank you for this powerful tool—it has significantly enhanced our spatial cell-cell interaction analysis. During my analysis using dec_cci_all(), I noticed the output states: `> obj_default

Zijiang8

Many thanks for creating spaTalk and particularly its virtual single-cell generation functionality, which has become an essential component of our spatial transcriptomics analysis pipeline. However, we consistently encounter two technical...

YuxiZhang-0113

Hi! I was wondering if I could try using SpaTalk on my visium HD data?

RunyuXia