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verified publisher icon YuLab-SMU

enrichKEGG()函数中use_internal_data=TRUE 时通路名没有去掉物种名

Open czy1238677 opened this issue 5 months ago • 1 comments

get_data_from_KEGG_db函数少了这一步: PATHID2NAME.df[,2] <- sub("\\s-\\s[^-]+$", "", PATHID2NAME.df[, 2])

czy1238677 avatar Aug 20 '25 09:08 czy1238677

Good catch! Yet, please realize that the use of the 'internal' data is not recommended, but you rather should download it from the KEGG server on he fly.

guidohooiveld avatar Sep 11 '25 09:09 guidohooiveld