Upsetplot is cropped

[nina-hahn]

Dear all,

I used the upsetplot for the kegg results. It is cropped so that I do not see any of the term names. It seems to be too big. How can I change the size?

Best, Nina

[zoqaiyum]

@nina-hahn , I am facing the same issue in my upsetplot :( I am also unable to add numbers on top of the bars.

[nina-hahn]

@zoqaiyum I did not find a solution but managed to improve it using:

x<-upsetplot(gse.BP)
x+theme(plot.margin = margin(t=0.5,
                             r=0.5,
                             b=0.5,
                             l=6,
                             unit = "cm"))

[zoqaiyum]

@nina-hahn , this worked for me too! Thank you very much. Would you have any idea on how to add numbers on top of the bars and maybe see which genes are common between the pathways?

[nina-hahn]

No, numbers would be great but I do not have a suggestion for that.