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how dotplot choose term to plot

Open asmlgkj opened this issue 2 years ago • 1 comments

Thank you very much for the world-famous R bag, which saved the status quo of enrichment analysis.

when I run res <- gseGO( gene_list, # 根据logFC排序的基因集

ont = "BP", # 可选"BP"、"MF"、"CC"三大类或"ALL"

OrgDb = org.Hs.eg.db, # 使用人的OrgDb keyType = "ENSEMBL", # 基因id类型 pvalueCutoff = 1, pAdjustMethod = "BH", # p值校正方法 )

and

dotplot( res, showCategory=10)

how dotplot choose the first 10 term, if it is p.adjust, but for the same p.adjust, how it define the first ten.

asmlgkj avatar Apr 26 '23 09:04 asmlgkj

image

asmlgkj avatar Apr 26 '23 09:04 asmlgkj