clusterProfiler
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how dotplot choose term to plot
Thank you very much for the world-famous R bag, which saved the status quo of enrichment analysis.
when I run res <- gseGO( gene_list, # 根据logFC排序的基因集
ont = "BP", # 可选"BP"、"MF"、"CC"三大类或"ALL"
OrgDb = org.Hs.eg.db, # 使用人的OrgDb keyType = "ENSEMBL", # 基因id类型 pvalueCutoff = 1, pAdjustMethod = "BH", # p值校正方法 )
and
dotplot( res, showCategory=10)
how dotplot choose the first 10 term, if it is p.adjust, but for the same p.adjust, how it define the first ten.
