back_spliced_junctions.bed

Open ericbrzoska opened this issue 3 years ago • 0 comments

Hi,

my task is to compute the coverage from the tophat2 accepted_hits.bam with the back_spliced_junction.bed, but I don´t know if the results I got from...

samtools depth -H -o Coverage/cov_TT17 -b back_spliced_junction.bed accepted_hits.bam

...are right. Can someone explain me what the columns after the first three [chrom, start, end] ones describe? Or does someone know if they are even used by samtools?

Feb 16 '22 17:02 ericbrzoska