deviaTE
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Python tool for the analysis and visualization of mobile genetic elements
Hello, I've run deviaTE and get stuck at the point of generation of .sam file. The script doesn't stop, and no errors are generated or anything in the log files....
Hello, I have a new issue with DEVIATE, I'm trying to use it with --single_copy_genes normalization. I included 5 genes sequences in the --library file and then I call them...
Hello, I was running deviaTE, and I got the following error. I checked and the library is writable This was my script: deviaTE --input_fq vieillardiiBT023_cat_uniq.fq --families ALL --library $data_folder/impolita-families_mcclintok7.fa This...
I used the following command using WGS Illumina sequencing reads and RepeatModeler libraries as input. deviaTE_prep --input Arthir.fastq --library Arthir-families.fa --threads 64 --quality_encoding phred+33 I get this output on the...
Hello, I am trying to run this for a set of raw sequences for Anopheles gambiae. I used EDTA to create a TE library from the agamP4 genome assembly and...
**Is your feature request related to a problem? Please describe.** A clear and concise description of what the problem is Hi same person: I am wondering about your diversity estimates....
