scala-cli: 2804- Support .jar files in -d option

[kannupriyakalra]

Issue- https://github.com/VirtusLab/scala-cli/issues/2804

-added code changes required for replicating scalac commands behaviour into scala-cli -added test (scala-cli compile -d option package into a jar)

[kannupriyakalra]

@bishabosha Thank you for reviewing my PR, I have incorporated changes in the integration test based on the comments. PR is up for re-review.

[Gedochao]

Closing this due to inactivity. Feel free to open another attempt.